diff --git a/extensions/git/src/commands.ts b/extensions/git/src/commands.ts
index 824798dc0c5..257943ed331 100644
--- a/extensions/git/src/commands.ts
+++ b/extensions/git/src/commands.ts
@@ -3462,12 +3462,15 @@ export class CommandCenter {
 			return;
 		}
 
-		const message = l10n.t('Proceed with migrating changes to the current repository?');
-		const detail = l10n.t('This will apply the worktree\'s changes to this repository and discard changes in the worktree.\nThis is IRREVERSIBLE!');
-		const proceed = l10n.t('Proceed');
-		const pick = await window.showWarningMessage(message, { modal: true, detail }, proceed);
-		if (pick !== proceed) {
-			return;
+		if (worktreeUri === undefined) {
+			// Non-interactive migration, do not show confirmation dialog
+			const message = l10n.t('Proceed with migrating changes to the current repository?');
+			const detail = l10n.t('This will apply the worktree\'s changes to this repository and discard changes in the worktree.\nThis is IRREVERSIBLE!');
+			const proceed = l10n.t('Proceed');
+			const pick = await window.showWarningMessage(message, { modal: true, detail }, proceed);
+			if (pick !== proceed) {
+				return;
+			}
 		}
 
 		await worktreeRepository.createStash(undefined, true);